STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN63494.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
SFN63521.1
O-acetylserine/cysteine efflux transporter.
 
    0.831
SFN36377.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.649
SFN55746.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.649
SFO47955.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.638
SFO55012.1
LysR family transcriptional regulator, cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.621
SFN63840.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.618
SFO23837.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.617
SFO37035.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.609
SFN36332.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.605
SFO32552.1
LysR substrate binding domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.563
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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