STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN73663.1FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. (446 aa)    
Predicted Functional Partners:
SFN73637.1
Alkanesulfonate monooxygenase.
 
    0.820
SFN73613.1
Sulfonate transport system substrate-binding protein.
 
 
  0.709
SFN73582.1
Sulfonate transport system ATP-binding protein.
 
 
  0.676
SFN73511.1
Sulfonate transport system permease protein.
  
 
  0.657
SFO37330.1
Hypothetical protein.
  
     0.561
SFN72559.1
Peptide/nickel transport system substrate-binding protein.
 
     0.549
SFN07711.1
Acyl-CoA dehydrogenase.
  
    0.534
SFO06773.1
Acyl-CoA dehydrogenase.
  
    0.501
SFN32450.1
FAD-NAD(P)-binding.
 
  
  0.471
SFN88123.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
    0.431
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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