STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN90782.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
SFN90759.1
Transcriptional regulator, TetR family.
 
     0.832
SFM56675.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.690
SFN98497.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.570
SFN90804.1
Hypothetical protein.
       0.565
SFN77212.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.502
SFN77481.1
Ribosomal protein RSM22 (predicted rRNA methylase).
  
     0.498
SFN90738.1
CAAX protease self-immunity.
       0.475
SFN87303.1
Hypothetical protein.
  
     0.472
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.