STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN91110.1Transcriptional regulator, TetR family. (202 aa)    
Predicted Functional Partners:
SFN91136.1
Hypothetical protein.
       0.800
SFN91166.1
Hypothetical protein.
       0.800
SFO42069.1
Transcriptional regulator, TetR family.
  
     0.649
SFO48601.1
Transcriptional regulator, TetR family.
  
     0.640
SFN68326.1
Transcriptional regulator, TetR family.
  
     0.629
SFO23570.1
Transcriptional regulator, TetR family.
  
     0.603
SFN36126.1
Transcriptional regulator, TetR family.
  
     0.602
SFN51206.1
Transcriptional regulator, TetR family.
  
     0.601
SFM63602.1
Transcriptional regulator, TetR family.
  
     0.600
SFO48615.1
Transcriptional regulator, TetR family.
  
     0.571
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.