Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM73672.1 | SFM83560.1 | SAMN05216207_1002192 | SAMN05216207_1003175 | DNA ligase D. | Bifunctional non-homologous end joining protein LigD. | 0.747 |
SFM73672.1 | SFN95844.1 | SAMN05216207_1002192 | SAMN05216207_102586 | DNA ligase D. | Bifunctional non-homologous end joining protein LigD. | 0.990 |
SFM73672.1 | SFO12458.1 | SAMN05216207_1002192 | SAMN05216207_103167 | DNA ligase D. | Hypothetical protein. | 0.732 |
SFM73672.1 | ku-2 | SAMN05216207_1002192 | SAMN05216207_102585 | DNA ligase D. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.852 |
SFM83560.1 | SFM73672.1 | SAMN05216207_1003175 | SAMN05216207_1002192 | Bifunctional non-homologous end joining protein LigD. | DNA ligase D. | 0.747 |
SFM83560.1 | SFM83844.1 | SAMN05216207_1003175 | SAMN05216207_1003187 | Bifunctional non-homologous end joining protein LigD. | 5'-3' exonuclease. | 0.946 |
SFM83560.1 | SFN03370.1 | SAMN05216207_1003175 | SAMN05216207_1006218 | Bifunctional non-homologous end joining protein LigD. | DNA ligase D, polymerase domain-containing protein. | 0.794 |
SFM83560.1 | SFN20472.1 | SAMN05216207_1003175 | SAMN05216207_101033 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase-3 subunit delta'. | 0.900 |
SFM83560.1 | SFN95844.1 | SAMN05216207_1003175 | SAMN05216207_102586 | Bifunctional non-homologous end joining protein LigD. | Bifunctional non-homologous end joining protein LigD. | 0.980 |
SFM83560.1 | SFO12437.1 | SAMN05216207_1003175 | SAMN05216207_103166 | Bifunctional non-homologous end joining protein LigD. | DNA ligase D. | 0.740 |
SFM83560.1 | SFO12458.1 | SAMN05216207_1003175 | SAMN05216207_103167 | Bifunctional non-homologous end joining protein LigD. | Hypothetical protein. | 0.914 |
SFM83560.1 | SFO15114.1 | SAMN05216207_1003175 | SAMN05216207_103311 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.993 |
SFM83560.1 | ku-2 | SAMN05216207_1003175 | SAMN05216207_102585 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.944 |
SFM83560.1 | polA | SAMN05216207_1003175 | SAMN05216207_1017119 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.979 |
SFM83844.1 | SFM83560.1 | SAMN05216207_1003187 | SAMN05216207_1003175 | 5'-3' exonuclease. | Bifunctional non-homologous end joining protein LigD. | 0.946 |
SFM83844.1 | SFN20472.1 | SAMN05216207_1003187 | SAMN05216207_101033 | 5'-3' exonuclease. | DNA polymerase-3 subunit delta'. | 0.954 |
SFM83844.1 | SFN95844.1 | SAMN05216207_1003187 | SAMN05216207_102586 | 5'-3' exonuclease. | Bifunctional non-homologous end joining protein LigD. | 0.940 |
SFM83844.1 | SFO12437.1 | SAMN05216207_1003187 | SAMN05216207_103166 | 5'-3' exonuclease. | DNA ligase D. | 0.405 |
SFM83844.1 | SFO15114.1 | SAMN05216207_1003187 | SAMN05216207_103311 | 5'-3' exonuclease. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.997 |
SFM83844.1 | polA | SAMN05216207_1003187 | SAMN05216207_1017119 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.927 |
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