STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO06510.1Transcriptional regulator, TetR family. (245 aa)    
Predicted Functional Partners:
SFO06475.1
ABC-2 type transport system permease protein.
 
     0.760
SFO06545.1
ATP-dependent DNA helicase RecQ.
       0.583
SFO06493.1
ABC-2 type transport system ATP-binding protein.
       0.544
SFO06583.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
 
     0.513
SFN49591.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
     0.500
SFO06565.1
Iron complex transport system substrate-binding protein.
       0.436
SFO06460.1
MoxR-like ATPase.
       0.421
SFO02924.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.415
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.