STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO07698.1Predicted nicotinamide N-methyase. (232 aa)    
Predicted Functional Partners:
SFM73766.1
Hypothetical protein.
   
   0.929
SFO29825.1
Magnesium chelatase subunit D.
  
 0.719
SFM69603.1
Dimethylglycine oxidase; Belongs to the GcvT family.
   
  0.679
SFM71285.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
   
  0.679
SFN55543.1
Hypothetical protein.
   
  0.679
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
  0.633
SFO07722.1
Hypothetical protein.
       0.631
SFO58956.1
Glycine/D-amino acid oxidase.
    
  0.605
SFN07392.1
Sarcosine/dimethylglycine N-methyltransferase.
  
 0.559
SFN07409.1
Glycine/sarcosine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Glycine N-methyltransferase family.
  
 0.559
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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