STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO11656.1Two component transcriptional regulator, LuxR family. (218 aa)    
Predicted Functional Partners:
SFO25184.1
PAS domain S-box-containing protein.
  
 0.984
SFM55682.1
Signal transduction histidine kinase.
  
 0.915
SFO11639.1
Signal transduction histidine kinase.
 
 0.899
SFN88511.1
Signal transduction histidine kinase.
 
 0.882
SFO32061.1
PAS domain S-box-containing protein.
  
 0.842
SFO13646.1
Signal transduction histidine kinase.
 0.830
SFO31187.1
Signal transduction histidine kinase.
 0.830
SFM61272.1
Signal transduction histidine kinase.
 
 0.827
SFN59150.1
Signal transduction histidine kinase.
 
 0.826
SFM61490.1
Signal transduction histidine kinase.
 
 0.823
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.