STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO26419.1DNA-binding transcriptional regulator, MerR family. (295 aa)    
Predicted Functional Partners:
SFO32061.1
PAS domain S-box-containing protein.
  
 0.884
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.798
SFO26474.1
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.789
SFO26447.1
Arsenite efflux pump ArsB, ACR3 family.
     
 0.779
SFN94696.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
   
  0.774
SFO59364.1
DNA-binding transcriptional regulator, MerR family.
  
     0.773
SFO63890.1
DNA-binding transcriptional regulator, MerR family.
  
     0.772
SFO38932.1
DNA-binding transcriptional regulator, MerR family.
  
     0.769
SFO61167.1
MerR family transcriptional regulator, gold-responsive activator of gol and ges genes.
  
     0.757
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.700
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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