STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO38871.1ABC-type branched-chain amino acid transport system, substrate-binding protein. (445 aa)    
Predicted Functional Partners:
SFO38848.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.994
SFO38830.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
SFO38780.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
 
 0.988
SFO38812.1
Branched-chain amino acid transport system ATP-binding protein.
 
 
 0.980
SFO38795.1
Branched-chain amino acid transport system ATP-binding protein.
 
 
 0.969
SFN00428.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.937
SFN15835.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.924
SFN00414.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.898
SFN15816.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.887
SFN00504.1
Branched-chain amino acid transport system substrate-binding protein.
  
  
  0.867
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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