STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO42245.1MFS transporter, AAHS family, benzoate transport protein. (420 aa)    
Predicted Functional Partners:
SFO47595.1
MFS transporter, AAHS family, 4-hydroxybenzoate transporter.
  
     0.750
SFN98660.1
Benzoate/toluate 1,2-dioxygenase beta subunit.
 
  
 0.670
SFN98702.1
Benzoate/toluate 1,2-dioxygenase alpha subunit.
  
 
  0.592
SFO42235.1
Transcriptional regulator, TetR family.
       0.535
SFN98628.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase.
 
   
 0.483
SFO09878.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.473
SFM86569.1
3-phenylpropionate/cinnamic acid dioxygenase, small subunit.
 
  
 0.464
SFO24803.1
Ring hydroxylating alpha subunit (catalytic domain).
  
 
  0.457
SFM71716.1
Predicted arabinose efflux permease, MFS family.
  
     0.434
SFO24824.1
Benzoate/toluate 1,2-dioxygenase beta subunit.
  
     0.401
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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