STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO53002.1Pimeloyl-ACP methyl ester carboxylesterase. (347 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.713
SFO48559.1
Rifamycin polyketide synthase modules 1, 2 and 3.
  
 0.679
SFO53013.1
Transcriptional regulator, TetR family.
 
     0.658
SFN94696.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
  0.564
SFO60481.1
2-hydroxy-6-oxo-6-(2'-carboxyphenyl)-hexa-2, 4-dienoate hydrolase.
  
     0.563
SFN07091.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.562
SFO53031.1
Hypothetical protein.
       0.551
SFM56675.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.547
SFO36793.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.543
SFO28484.1
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase.
  
     0.531
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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