Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQQ66982.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (847 aa)    
Predicted Functional Partners:
AQQ69380.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
AQQ66984.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.823
AQQ66983.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.751
AQQ68877.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.745
AQQ69614.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.741
AQQ68876.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
AQQ67212.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.701
AQQ68828.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.701
AQQ68829.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
AQQ68878.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.697
Your Current Organism:
Microbulbifer agarilyticus
NCBI taxonomy Id: 260552
Other names: DSM 19200, JCM 14708, M. agarilyticus, Microbulbifer agarilyticus Miyazaki et al. 2008, Microbulbifer sp. JAMB-A3, Microbulbifer sp. JAMM 0654, Microbulbifer sp. JAMM 0793, strain JAMB A3
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