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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQQ69418.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)    
Predicted Functional Partners:
nagZ
beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 
0.926
AQQ66571.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.908
AQQ69391.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.907
AQQ68398.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.906
AQQ67339.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.904
AQQ67434.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.904
ddpX
Hypothetical protein; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
  
 0.764
AQQ67258.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
  
 0.577
AQQ67254.1
DUF1445 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-glutamate cyclase family.
       0.537
AQQ67257.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
Your Current Organism:
Microbulbifer agarilyticus
NCBI taxonomy Id: 260552
Other names: DSM 19200, JCM 14708, M. agarilyticus, Microbulbifer agarilyticus Miyazaki et al. 2008, Microbulbifer sp. JAMB-A3, Microbulbifer sp. JAMM 0654, Microbulbifer sp. JAMM 0793, strain JAMB A3
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