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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQQ68507.1YraN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
AQQ68508.1
Phosphoheptose isomerase; Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.805
AQQ66383.1
ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.767
AQQ68509.1
Phospholipid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.765
AQQ68506.1
LppC family lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.738
AQQ69638.1
Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.675
AQQ66231.1
DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.655
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.578
AQQ68479.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.505
AQQ68922.1
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.412
Your Current Organism:
Microbulbifer agarilyticus
NCBI taxonomy Id: 260552
Other names: DSM 19200, JCM 14708, M. agarilyticus, Microbulbifer agarilyticus Miyazaki et al. 2008, Microbulbifer sp. JAMB-A3, Microbulbifer sp. JAMM 0654, Microbulbifer sp. JAMM 0793, strain JAMB A3
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