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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQQ68868.1Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)    
Predicted Functional Partners:
AQQ69328.1
Alpha-dextran endo-1,6-alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 0.993
AQQ66712.1
Pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 0.993
AQQ68835.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.927
AQQ68199.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.921
AQQ69620.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.819
AQQ69283.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.630
AQQ68250.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.630
AQQ68863.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.609
AQQ69611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.559
AQQ69619.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.515
Your Current Organism:
Microbulbifer agarilyticus
NCBI taxonomy Id: 260552
Other names: DSM 19200, JCM 14708, M. agarilyticus, Microbulbifer agarilyticus Miyazaki et al. 2008, Microbulbifer sp. JAMB-A3, Microbulbifer sp. JAMM 0654, Microbulbifer sp. JAMM 0793, strain JAMB A3
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