STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AU385_16870DNA-binding response regulator. (240 aa)    
Predicted Functional Partners:
AU385_16875
PAS domain-containing sensor histidine kinase.
 0.998
AU385_14315
PAS domain-containing sensor histidine kinase.
 
 0.836
AU385_10035
Sensor histidine kinase.
 
 0.807
AU385_07555
Sensor histidine kinase.
  
   0.803
AU385_13575
annotation not available
  
   0.797
AU385_01485
Sensor histidine kinase.
 
 0.779
AU385_02140
Two-component sensor histidine kinase.
 
 0.775
ccsB
C-type cytochrome biogenesis protein CcsB.
  
    0.756
walK
Cell wall metabolism sensor histidine kinase WalK.
 
 0.754
AU385_06805
Sensor histidine kinase.
 
 
 0.747
Your Current Organism:
Bacillus halotolerans
NCBI taxonomy Id: 260554
Other names: ATCC 25096, B. halotolerans, Bacillus axarquiensis, Bacillus axarquiensis Ruiz-Garcia et al. 2005 emend. Dunlap et al. 2016, Bacillus malacitensis, Bacillus malacitensis Ruiz-Garcia et al. 2005, Brevibacterium halotolerans, CCUG 47676, CECT 5687 [[Bacillus malacitensis]], CECT 5688 [[Bacillus axarquiensis]], CIP 108772 [[Bacillus axarquiensis]], CIP 67.21, DSM 8802, JCM 12400, LMG 22476 [[Bacillus axarquiensis]], LMG 22477 [[Bacillus malacitensis]], LMG:22476 [[Bacillus axarquiensis]], LMG:22477 [[Bacillus malacitensis]], NRRL B-41617 [[Bacillus axarquiensis]], strain CR-119 [[Bacillus axarquiensis]], strain CR-95 [[Bacillus malacitensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.