STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRK49253.1Membrane protein. (86 aa)    
Predicted Functional Partners:
CRK49254.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
   0.984
ctaD
Putative cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.945
ctaD-2
Putative cytochrome c oxidase subunit 1-alpha; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.945
ctaD-3
Putative cytochrome c oxidase subunit 1-alpha; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.945
ctaC
Putative cytochrome c oxidase subunit 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
   0.941
ctaF
Putative cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
   0.941
qcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
   0.941
qcrA
Putative menaquinol-cytochrome c reductase iron-sulfur subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
   0.941
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit.
    
   0.941
ctaE
Putative cytochrome c oxidase subunit 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
   0.941
Your Current Organism:
Rhodococcus sp. RD62
NCBI taxonomy Id: 260936
Other names: R. sp. RD6.2, Rhodococcus sp. RD6.2
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