CRK49516.1 protein (Rhodococcus sp. RD62) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRK49516.1

Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (398 aa)

Predicted Functional Partners:

CRK50539.1

0.917

CRK49501.1

0.895

CRK52520.1

0.880

CRK52797.1

0.880

rfbC

0.877

hemB

0.854

hemA

0.806

CRK50562.1

0.802

CRK51135.1

0.802

CRK52539.1

0.802

Your Current Organism:

Rhodococcus sp. RD62

NCBI taxonomy Id: 260936
Other names: R. sp. RD6.2, Rhodococcus sp. RD6.2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRK49501.1	CRK49516.1	RHCRD62_10356	RHCRD62_10371	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.895
CRK49501.1	CRK50539.1	RHCRD62_10356	RHCRD62_120060	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Non-ribosomal peptide synthetase.	0.971
CRK49501.1	CRK50562.1	RHCRD62_10356	RHCRD62_120083	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Hypothetical protein; No homology to any previously reported sequences.	0.955
CRK49501.1	CRK51135.1	RHCRD62_10356	RHCRD62_20574	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Non-ribosomal peptide synthetase.	0.942
CRK49501.1	CRK52520.1	RHCRD62_10356	RHCRD62_40407	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Non-ribosomal peptide synthetase.	0.956
CRK49501.1	CRK52539.1	RHCRD62_10356	RHCRD62_40426	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uroporphyrinogen-III synthase.	0.877
CRK49501.1	CRK52797.1	RHCRD62_10356	RHCRD62_40684	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Non-ribosomal peptide synthetase (fragment).	0.956
CRK49501.1	hemA	RHCRD62_10356	RHCRD62_40424	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).	0.954
CRK49501.1	hemB	RHCRD62_10356	RHCRD62_40427	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Delta-aminolevulinic acid dehydratase (porphobilinogen synthase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ALAD family.	0.970
CRK49516.1	CRK49501.1	RHCRD62_10371	RHCRD62_10356	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.895
CRK49516.1	CRK50539.1	RHCRD62_10371	RHCRD62_120060	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Non-ribosomal peptide synthetase.	0.917
CRK49516.1	CRK50562.1	RHCRD62_10371	RHCRD62_120083	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hypothetical protein; No homology to any previously reported sequences.	0.802
CRK49516.1	CRK51135.1	RHCRD62_10371	RHCRD62_20574	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Non-ribosomal peptide synthetase.	0.802
CRK49516.1	CRK52520.1	RHCRD62_10371	RHCRD62_40407	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Non-ribosomal peptide synthetase.	0.880
CRK49516.1	CRK52539.1	RHCRD62_10371	RHCRD62_40426	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Uroporphyrinogen-III synthase.	0.802
CRK49516.1	CRK52797.1	RHCRD62_10371	RHCRD62_40684	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Non-ribosomal peptide synthetase (fragment).	0.880
CRK49516.1	hemA	RHCRD62_10371	RHCRD62_40424	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).	0.806
CRK49516.1	hemB	RHCRD62_10371	RHCRD62_40427	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Delta-aminolevulinic acid dehydratase (porphobilinogen synthase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ALAD family.	0.854
CRK49516.1	rfbC	RHCRD62_10371	RHCRD62_10373	Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	dTDP-4-dehydrorhamnose 3,5-epimerase.	0.877
CRK50539.1	CRK49501.1	RHCRD62_120060	RHCRD62_10356	Non-ribosomal peptide synthetase.	Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.971