STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRK51228.1Oxidoreductase. (276 aa)    
Predicted Functional Partners:
CRK51226.1
NiFe hydrogenase beta subunit.
 
 0.997
CRK51229.1
NADH ubiquinone oxidoreductase.
 
  
 0.992
CRK51230.1
Ni-dependent hydrogenase large subunit.
 
  
 0.989
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.987
CRK51227.1
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
  
  0.962
CRK51231.1
Hydrogenase maturation protease.
 
    0.961
fprB
Putative ferredoxin/ferredoxin--NADP reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.906
fprB-2
Putative ferredoxin/ferredoxin--NADP reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.906
fprB-3
Putative ferredoxin/ferredoxin--NADP reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.906
pyrAB
Pyrimidine-specific carbamoyl-phosphate synthetase (large subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.
  
 0.875
Your Current Organism:
Rhodococcus sp. RD62
NCBI taxonomy Id: 260936
Other names: R. sp. RD6.2, Rhodococcus sp. RD6.2
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