STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bpoC-2Putative non-heme bromoperoxidase BpoC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (266 aa)    
Predicted Functional Partners:
CRK50539.1
Non-ribosomal peptide synthetase.
 
 
 0.809
CRK51135.1
Non-ribosomal peptide synthetase.
 
 
 0.797
CRK52797.1
Non-ribosomal peptide synthetase (fragment).
 
 
 0.791
CRK52520.1
Non-ribosomal peptide synthetase.
 
 
 0.787
CRK54364.1
Polyketide synthase.
  
 0.781
CRK50562.1
Hypothetical protein; No homology to any previously reported sequences.
   
 0.771
CRK49180.1
Fatty acid synthase.
 
 
 0.754
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
  
 
 0.671
CRK52780.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the binding-protein-dependent transport system permease family.
    
  0.658
CRK52786.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the binding-protein-dependent transport system permease family.
    
  0.658
Your Current Organism:
Rhodococcus sp. RD62
NCBI taxonomy Id: 260936
Other names: R. sp. RD6.2, Rhodococcus sp. RD6.2
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