Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CRK49652.1 | CRK50259.1 | RHCRD62_10507 | RHCRD62_100171 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Substrate-binding protein. | 0.513 |
| CRK49652.1 | hup | RHCRD62_10507 | RHCRD62_80098 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.578 |
| CRK49652.1 | rplS | RHCRD62_10507 | RHCRD62_80166 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.791 |
| CRK49652.1 | rpsO | RHCRD62_10507 | RHCRD62_50411 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Ribosomal protein S15 (BS18); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.768 |
| CRK49652.1 | rpsT | RHCRD62_10507 | RHCRD62_80021 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Ribosomal protein S20 (BS20); Binds directly to 16S ribosomal RNA. | 0.747 |
| CRK50259.1 | CRK49652.1 | RHCRD62_100171 | RHCRD62_10507 | Substrate-binding protein. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.513 |
| CRK50259.1 | hup | RHCRD62_100171 | RHCRD62_80098 | Substrate-binding protein. | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.749 |
| CRK50259.1 | nusA | RHCRD62_100171 | RHCRD62_50423 | Substrate-binding protein. | Transcription translation coupling factor involved in Rho-dependent transcription termination; Participates in both transcription termination and antitermination. | 0.430 |
| CRK50259.1 | pheT | RHCRD62_100171 | RHCRD62_30757 | Substrate-binding protein. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.848 |
| dnaA | hup | RHCRD62_70135 | RHCRD62_80098 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.796 |
| hup | CRK49652.1 | RHCRD62_80098 | RHCRD62_10507 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.578 |
| hup | CRK50259.1 | RHCRD62_80098 | RHCRD62_100171 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Substrate-binding protein. | 0.749 |
| hup | dnaA | RHCRD62_80098 | RHCRD62_70135 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.796 |
| hup | leuD | RHCRD62_80098 | RHCRD62_80097 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 3-isopropylmalate dehydratase (small subunit); Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.604 |
| hup | lsr | RHCRD62_80098 | RHCRD62_100128 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Nucleoid-associated protein Lsr2. | 0.719 |
| hup | nusA | RHCRD62_80098 | RHCRD62_50423 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Transcription translation coupling factor involved in Rho-dependent transcription termination; Participates in both transcription termination and antitermination. | 0.629 |
| hup | pheT | RHCRD62_80098 | RHCRD62_30757 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.733 |
| hup | rplS | RHCRD62_80098 | RHCRD62_80166 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.641 |
| hup | rpsO | RHCRD62_80098 | RHCRD62_50411 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Ribosomal protein S15 (BS18); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.737 |
| hup | rpsT | RHCRD62_80098 | RHCRD62_80021 | DNA-binding protein HU homolog; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Ribosomal protein S20 (BS20); Binds directly to 16S ribosomal RNA. | 0.746 |
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