STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRK54145.1Glycerone kinase family protein. (550 aa)    
Predicted Functional Partners:
CRK54052.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 0.990
recG
ATP-dependent DNA helicase RecG.
  
    0.927
nagD
Ribonucleotide monophosphatase NagD; Belongs to the HAD-like hydrolase superfamily.
      
 0.733
rpmB-2
50S ribosomal protein L28 1; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.702
CRK54148.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.684
CRK52707.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.618
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
     0.613
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
       0.540
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.510
CRK52704.1
Membrane protein.
  
  
 0.474
Your Current Organism:
Rhodococcus sp. RD62
NCBI taxonomy Id: 260936
Other names: R. sp. RD6.2, Rhodococcus sp. RD6.2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.