STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRK54457.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (151 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase.
  
 
 0.844
CRK54456.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CRK52859.1
Iron-sulfur cluster assembly protein IscU.
  
 
 0.771
CRK54458.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.589
yfiC-2
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.589
ssuD
Alkanesulfonate monooxygenase, FMNH(2)-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.573
CRK54460.1
Hypothetical protein; No homology to any previously reported sequences.
       0.539
ribAB
Fused GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
   0.491
CRK53254.1
Putative penicillin-binding protein 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.487
ftsK
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
      
 0.482
Your Current Organism:
Rhodococcus sp. RD62
NCBI taxonomy Id: 260936
Other names: R. sp. RD6.2, Rhodococcus sp. RD6.2
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