Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRK49180.1 | CRK54530.1 | RHCRD62_10035 | RHCRD62_90209 | Fatty acid synthase. | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | 0.435 |
CRK49180.1 | guaA | RHCRD62_10035 | RHCRD62_10818 | Fatty acid synthase. | GMP synthetase; Catalyzes the synthesis of GMP from XMP. | 0.720 |
CRK49298.1 | CRK53042.1 | RHCRD62_10153 | RHCRD62_50245 | Ribonuclease. | Ribonuclease D. | 0.943 |
CRK49298.1 | CRK54530.1 | RHCRD62_10153 | RHCRD62_90209 | Ribonuclease. | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | 0.454 |
CRK49298.1 | rnpA | RHCRD62_10153 | RHCRD62_70132 | Ribonuclease. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.873 |
CRK53042.1 | CRK49298.1 | RHCRD62_50245 | RHCRD62_10153 | Ribonuclease D. | Ribonuclease. | 0.943 |
CRK53042.1 | CRK54530.1 | RHCRD62_50245 | RHCRD62_90209 | Ribonuclease D. | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | 0.522 |
CRK53042.1 | rnpA | RHCRD62_50245 | RHCRD62_70132 | Ribonuclease D. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.908 |
CRK54530.1 | CRK49180.1 | RHCRD62_90209 | RHCRD62_10035 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Fatty acid synthase. | 0.435 |
CRK54530.1 | CRK49298.1 | RHCRD62_90209 | RHCRD62_10153 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Ribonuclease. | 0.454 |
CRK54530.1 | CRK53042.1 | RHCRD62_90209 | RHCRD62_50245 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Ribonuclease D. | 0.522 |
CRK54530.1 | CRK54531.1 | RHCRD62_90209 | RHCRD62_90210 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.552 |
CRK54530.1 | glgB | RHCRD62_90209 | RHCRD62_10012 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.436 |
CRK54530.1 | glgC | RHCRD62_90209 | RHCRD62_10672 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 0.476 |
CRK54530.1 | guaA | RHCRD62_90209 | RHCRD62_10818 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | GMP synthetase; Catalyzes the synthesis of GMP from XMP. | 0.691 |
CRK54530.1 | rbfA | RHCRD62_90209 | RHCRD62_50419 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.446 |
CRK54530.1 | rnpA | RHCRD62_90209 | RHCRD62_70132 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.454 |
CRK54530.1 | treZ | RHCRD62_90209 | RHCRD62_30584 | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | Malto-oligosyltrehalose trehalohydrolase. | 0.436 |
CRK54531.1 | CRK54530.1 | RHCRD62_90210 | RHCRD62_90209 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | 0.552 |
glgB | CRK54530.1 | RHCRD62_10012 | RHCRD62_90209 | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. | 0.436 |
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