STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K91_1098Cell envelope biogenesis protein TonB. (329 aa)    
Predicted Functional Partners:
A3K91_1099
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
  
 
 0.836
tolQ
Protein tolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.803
A3K91_1097
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.692
A3K91_1020
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
  
 
 0.639
A3K91_2123
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
  
 
 0.639
A3K91_1241
Pfam:pfam00593 TonB dependent receptor.
  
 
 0.604
A3K91_1019
Flagellar motor protein MotA; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
  
 
 0.567
A3K91_2124
Biopolymer transporter ExbB; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
  
 
 0.567
A3K91_2026
Hypothetical protein; Pfam:pfam11575 FhuF 2Fe-2S C-terminal domain.
   
    0.546
A3K91_1229
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
   
 
 0.517
Your Current Organism:
Psychrobacter alimentarius
NCBI taxonomy Id: 261164
Other names: DSM 16065, JCM 12315, KCTC 12186, P. alimentarius, Psychrobacter alimentarius Yoon et al. 2005, strain JG-100
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