STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K91_1103Proline dehydrogenase. (230 aa)    
Predicted Functional Partners:
A3K91_1102
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
     0.879
A3K91_0901
Hypothetical protein.
  
     0.634
A3K91_0308
Hypothetical protein.
  
     0.628
A3K91_1649
Pfam:pfam13395 HNH endonuclease.
  
     0.602
A3K91_1307
Pfam:pfam04257 Exodeoxyribonuclease V, gamma subunit.
  
     0.599
A3K91_1194
Hypothetical protein; Pfam:pfam13801 Heavy-metal resistance.
  
     0.574
A3K91_2508
C4-dicarboxylate ABC transporter permease; Pfam:pfam04290 Tripartite ATP-independent periplasmic transporters, DctQ component.
  
     0.562
A3K91_1637
Putative transcription factor; Pfam:pfam13280 WYL domain.
  
     0.545
A3K91_1150
Putative glycosyltransferase.
  
     0.516
A3K91_2080
Adenylate cyclase; Pfam:pfam05235 CHAD domain.
 
     0.502
Your Current Organism:
Psychrobacter alimentarius
NCBI taxonomy Id: 261164
Other names: DSM 16065, JCM 12315, KCTC 12186, P. alimentarius, Psychrobacter alimentarius Yoon et al. 2005, strain JG-100
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