STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K91_1235Peptide synthetase; Pfam:pfam06684 Amino acid synthesis. (200 aa)    
Predicted Functional Partners:
A3K91_1234
Pfam:pfam12697 Alpha/beta hydrolase family.
 
     0.944
A3K91_1232
Alkanal monooxygenase alpha chain; Pfam:pfam00296 Luciferase-like monooxygenase.
 
     0.911
A3K91_1233
Pfam:pfam01613 Flavin reductase like domain.
 
     0.903
A3K91_1236
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
 
     0.764
A3K91_1237
Pfam:pfam02627 Carboxymuconolactone decarboxylase family.
 
     0.749
A3K91_1231
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
     0.739
A3K91_1252
Pfam:pfam02574 Homocysteine S-methyltransferase.
  
     0.457
A3K91_1238
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
       0.439
Your Current Organism:
Psychrobacter alimentarius
NCBI taxonomy Id: 261164
Other names: DSM 16065, JCM 12315, KCTC 12186, P. alimentarius, Psychrobacter alimentarius Yoon et al. 2005, strain JG-100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.