Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A3K91_0497 | A3K91_1712 | A3K91_0497 | A3K91_1712 | Pfam:pfam02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family. | Pfam:pfam02016 LD-carboxypeptidase. | 0.693 |
A3K91_1712 | A3K91_0497 | A3K91_1712 | A3K91_0497 | Pfam:pfam02016 LD-carboxypeptidase. | Pfam:pfam02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family. | 0.693 |
A3K91_1712 | A3K91_2412 | A3K91_1712 | A3K91_2412 | Pfam:pfam02016 LD-carboxypeptidase. | Membrane protein; Pfam:pfam13515 Fusaric acid resistance protein-like. | 0.472 |
A3K91_1712 | mrdA | A3K91_1712 | A3K91_1938 | Pfam:pfam02016 LD-carboxypeptidase. | Cell division protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.516 |
A3K91_1712 | nagZ | A3K91_1712 | A3K91_0354 | Pfam:pfam02016 LD-carboxypeptidase. | Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.402 |
A3K91_2412 | A3K91_1712 | A3K91_2412 | A3K91_1712 | Membrane protein; Pfam:pfam13515 Fusaric acid resistance protein-like. | Pfam:pfam02016 LD-carboxypeptidase. | 0.472 |
mrdA | A3K91_1712 | A3K91_1938 | A3K91_1712 | Cell division protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | Pfam:pfam02016 LD-carboxypeptidase. | 0.516 |
nagZ | A3K91_1712 | A3K91_0354 | A3K91_1712 | Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | Pfam:pfam02016 LD-carboxypeptidase. | 0.402 |