STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K91_1767Hypothetical protein; Pfam:pfam05166 YcgL domain. (106 aa)    
Predicted Functional Partners:
A3K91_0156
Pfam:pfam04751 Protein of unknown function (DUF615).
  
     0.654
A3K91_0301
Type IV fimbrial biogenesis protein PilV.
  
     0.634
A3K91_2330
Hypothetical protein.
  
     0.628
A3K91_0302
Type IV fimbrial biogenesis protein PilW.
  
     0.627
A3K91_0968
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.597
A3K91_2486
Hypothetical protein; Pfam:pfam05036 Sporulation related domain.
  
     0.569
A3K91_2222
MORN repeat family protein; Pfam:pfam01650 Peptidase C13 family.
  
     0.560
A3K91_1766
Hypothetical protein.
       0.538
A3K91_0554
TolA protein; Pfam:pfam01476 LysM domain.
  
     0.526
A3K91_2395
Hypothetical protein.
  
     0.526
Your Current Organism:
Psychrobacter alimentarius
NCBI taxonomy Id: 261164
Other names: DSM 16065, JCM 12315, KCTC 12186, P. alimentarius, Psychrobacter alimentarius Yoon et al. 2005, strain JG-100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.