STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K91_2087Hypothetical protein; Pfam:pfam04940 Sensors of blue-light using FAD. (202 aa)    
Predicted Functional Partners:
A3K91_2728
Histidine kinase; Pfam:pfam00072 Response regulator receiver domain.
 
 
 0.843
A3K91_2406
Hypothetical protein; Pfam:pfam04940 Sensors of blue-light using FAD.
  
     0.712
A3K91_0439
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.620
A3K91_0864
DNA-binding protein Fis; Pfam:pfam02954 Bacterial regulatory protein, Fis family; Belongs to the transcriptional regulatory Fis family.
    
 
 0.586
A3K91_1025
Type IV pilus biogenesis protein PilZ; Pfam:pfam07238 PilZ domain.
    
   0.505
A3K91_2169
Diguanylate phosphodiesterase; Pfam:pfam00563 EAL domain.
  
 
 0.481
A3K91_2173
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.426
A3K91_1449
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
  
 
 0.418
Your Current Organism:
Psychrobacter alimentarius
NCBI taxonomy Id: 261164
Other names: DSM 16065, JCM 12315, KCTC 12186, P. alimentarius, Psychrobacter alimentarius Yoon et al. 2005, strain JG-100
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