STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K91_2270Hypothetical protein. (234 aa)    
Predicted Functional Partners:
A3K91_1494
Pfam:pfam08291 Peptidase M15.
  
    0.770
A3K91_0900
Hypothetical protein; Pfam:pfam10107 Endonuclease related to archaeal Holliday junction resolvase.
  
     0.762
A3K91_0867
Hypothetical protein; Pfam:pfam14559 Tetratricopeptide repeat.
  
     0.759
A3K91_2178
Putative general secretion pathway protein; Pfam:pfam11356 Type IV pilus biogenesis.
  
     0.755
A3K91_1523
Outer membrane protein G1b.
  
     0.740
A3K91_0301
Type IV fimbrial biogenesis protein PilV.
  
     0.735
A3K91_0554
TolA protein; Pfam:pfam01476 LysM domain.
  
     0.735
A3K91_1900
Hypothetical protein.
  
     0.726
A3K91_2241
Pfam:pfam06078 Bacterial protein of unknown function (DUF937).
  
     0.724
A3K91_1479
Hypothetical protein; Pfam:pfam02698 DUF218 domain.
  
     0.706
Your Current Organism:
Psychrobacter alimentarius
NCBI taxonomy Id: 261164
Other names: DSM 16065, JCM 12315, KCTC 12186, P. alimentarius, Psychrobacter alimentarius Yoon et al. 2005, strain JG-100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.