STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ00598.1KEGG: nit:NAL212_2582 cytochrome c class I. (239 aa)    
Predicted Functional Partners:
AEJ00599.1
PFAM: Cytochrome c, class I; KEGG: nit:NAL212_2581 gluconate 2-dehydrogenase (acceptor).
    0.990
AEJ02429.1
KEGG: neu:NE2567 hypothetical protein; TIGRFAM: Beta-lactamase hydrolase-like; PFAM: Beta-lactamase hydrolase-like; Lycopene beta/epsilon cyclase.
   
 
 0.810
AEJ03157.1
PFAM: Cytochrome c, class I; KEGG: nit:NAL212_0199 cytochrome c class I.
 
     0.777
AEJ03158.1
KEGG: nit:NAL212_0198 cytochrome c class I.
  
     0.768
AEJ02853.1
PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.
 
  
 0.745
AEJ02855.1
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
   
 0.679
AEJ00597.1
KEGG: nit:NAL212_1516 hypothetical protein.
 
     0.576
AEJ02854.1
Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.540
AEJ00278.1
KEGG: nit:NAL212_0530 putative transmembrane protein.
 
   
 0.522
AEJ00586.1
PFAM: RDD; KEGG: nit:NAL212_1753 RDD domain containing protein.
  
     0.502
Your Current Organism:
Nitrosomonas sp. Is79A3
NCBI taxonomy Id: 261292
Other names: N. sp. Is79A3
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