STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpA_1Transmembrane permease MsmF. (294 aa)    
Predicted Functional Partners:
yesO
ABC transporter periplasmic substrate-binding protein.
 
 0.999
ycjP_1
Binding-protein-dependent transporter inner membrane protein.
 0.998
msmK
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.997
ugpC
ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.987
ycjP_2
Binding-protein-dependent transport system inner membrane protein.
 0.985
CUP34000.1
Extracellular solute-binding protein.
  
 0.946
sacA
Sucrose-6-phosphate hydrolase e1; Belongs to the glycosyl hydrolase 32 family.
  
    0.783
iolC_1
Sugar kinase.
  
    0.732
ptsG
PTS system glucose subfamily transporter subunit IIA.
   
 
 0.673
bglF_1
PTS system beta-glucoside-specific transporter subunit IIABC.
   
 
 0.673
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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