STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO85844.1ABC transporter. (666 aa)    
Predicted Functional Partners:
lolD_2
ABC transporter ATP-binding protein.
 0.985
graS_1
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.945
lolD_5
ABC transporter.
 
 0.907
graR_1
DNA-binding response regulator.
 
    0.892
macB_2
ABC transporter ATP-binding protein/permease.
  
 0.861
graS_2
Two-component sensor histidine kinase.
 
 
 0.850
lolD_6
Bacitracin ABC transporter ATP-binding protein.
 0.839
graS_3
Signal transduction histidine kinase.
 
 
 0.743
lolD_3
Phosphonate-transporting ATPase.
 
  0.659
CUP31463.1
Lipoprotein.
 
 
 
 0.620
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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