STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO88820.1Uncharacterised protein. (144 aa)    
Predicted Functional Partners:
CUO88794.1
Uncharacterised protein.
 
   
 0.962
nylB
Beta-lactamase.
  
     0.558
CUO84132.1
DNA repair photolyase.
  
     0.500
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.477
CUP00285.1
Putative transcriptional regulator.
  
     0.442
gph_1
HAD family hydrolase.
       0.441
pknK
ATP-dependent transcriptional regulator.
  
     0.441
CUO51115.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.421
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.