STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP06083.1Phospholipase C zinc-binding. (237 aa)    
Predicted Functional Partners:
amiC
Putative N-acetylmuramoyl-L-alanine amidase.
       0.762
CUP20608.1
Putative sporulation protein YtxC.
  
     0.673
CUO85365.1
Endonuclease/exonuclease/phosphatase.
   
  
 0.666
CUO97789.1
Endonuclease/exonuclease/phosphatase.
   
  
 0.666
mazG2
MazG.
  
     0.662
yheS_3
ABC transporter ATP-binding protein.
       0.596
CUP06129.1
Membrane spanning protein.
 
     0.589
CUO51115.1
N-acetylmuramoyl-L-alanine amidase.
   
    0.536
CUO95509.1
N-acetylmuramoyl-L-alanine amidase.
   
    0.536
CUP06031.1
Uncharacterised protein.
       0.507
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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