STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqD_2Capsular exopolysaccharide family. (239 aa)    
Predicted Functional Partners:
ywqE
CpsB protein.
  
 0.975
cap8A
Cps19aC.
 
 
 0.954
wcaJ_2
Sugar transferase.
 
 
 0.891
wcaJ_1
Capsular polysaccharide biosynthsis protein.
 
 
 0.875
porA_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.823
capD_3
Capsular polysaccharide biosynthesis protein.
 
 
 0.809
rnfB
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.684
NuoF
NADH:ubiquinone oxidoreductase%2C NADH-binding 51 kDa subunit.
   
 0.682
CUP00119.1
Nitroreductase family protein fused to ferredoxin domain.
  
 
 0.658
CUP00920.1
Nitroreductase.
  
 
 0.658
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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