STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ29678.1Aminotransferase. (393 aa)    
Predicted Functional Partners:
SJZ29719.1
Glutamate synthase (ferredoxin).
    
 0.944
pheA
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
 
 0.923
SJZ56278.1
Aspartate kinase.
  
 0.912
SJZ29705.1
N-acetylglutamate synthase; Belongs to the acetyltransferase family.
  
 
 0.908
SJZ29679.1
DNA-binding transcriptional regulator, Lrp family.
 
   
 0.892
carB
Carbamoyl-phosphate synthase large subunit; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family.
 
 0.862
trpF
Indole-3-glycerol phosphate synthase; Belongs to the TrpF family.
    
 0.851
SJZ32646.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.819
SJZ57454.1
Oxaloacetate decarboxylase, alpha subunit.
    
 0.819
SJZ29712.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
 0.807
Your Current Organism:
Treponema porcinum
NCBI taxonomy Id: 261392
Other names: ATCC BAA-908, CIP 108245, JCM 12342, T. porcinum, Treponema porcinum Nordhoff et al. 2005, Treponema sp. 14V28, strain 14V28
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