STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT36996.1Transcriptional regulator, LacI family. (348 aa)    
Predicted Functional Partners:
SBT44544.1
Glutamate synthase (NADH) large subunit.
    
 
 0.914
SBT43202.1
Amino acid adenylation domain-containing protein.
    
 
 0.858
SBT43204.1
Amino acid adenylation domain-containing protein.
    
   0.854
SBT36988.1
Cellobiose ABC transporter membrane protein.
 
     0.639
SBT36990.1
Cellobiose ABC transporter membrane protein.
       0.593
SBT36993.1
Broad-specificity cellobiase.
   
  0.563
SBT36983.1
Cellobiose-binding protein.
 
     0.518
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.480
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.480
SBT47390.1
Adenylylsulfate kinase.
    
   0.480
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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