STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT38177.1Transcriptional regulator, TetR family. (316 aa)    
Predicted Functional Partners:
SBT44400.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
  
 0.839
SBT38179.1
2-polyprenyl-6-methoxyphenol hydroxylase.
 
     0.722
SBT41864.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.566
SBT44798.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.560
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.522
SBT43529.1
Transcriptional regulator, TetR family.
  
     0.499
SBT42814.1
Transcriptional regulator, TetR family.
  
     0.486
SBT42512.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.485
vgb
Virginiamycin B lyase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid.
  
     0.481
SBT44499.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.465
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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