STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT38741.1Transcriptional regulator, IclR family. (257 aa)    
Predicted Functional Partners:
SBT38751.1
Pyruvate, water dikinase.
 
     0.716
SBT50078.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.666
SBT48767.1
IclR helix-turn-helix domain-containing protein.
  
     0.628
SBT38743.1
Hypothetical protein; Belongs to the cytochrome P450 family.
 
     0.607
SBT50082.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.604
SBT50836.1
Transcriptional regulator, IclR family.
  
     0.602
SBT38747.1
Pyruvate, water dikinase.
 
     0.584
SBT48719.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.580
SBT43230.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
  0.529
SBT46252.1
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
  
  0.445
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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