STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT41674.1Glutamate or tyrosine decarboxylase. (455 aa)    
Predicted Functional Partners:
SBT44544.1
Glutamate synthase (NADH) large subunit.
     
 0.828
SBT43202.1
Amino acid adenylation domain-containing protein.
  
 
 0.802
SBT39355.1
Acyl transferase domain-containing protein.
     
 0.709
SBT42495.1
Monoamine oxidase.
    
 0.709
SBT43754.1
Pimaricinolide synthase PimS1.
     
 0.709
SBT43796.1
Acyl transferase domain-containing protein.
     
 0.709
SBT43800.1
Acyl transferase domain-containing protein.
     
 0.709
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.703
SBT43766.1
Aspartate aminotransferase.
  
 
 0.669
SBT52688.1
Histidine ammonia-lyase.
     
 0.666
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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