STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT42437.1L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (433 aa)    
Predicted Functional Partners:
SBT42439.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
 0.905
uxaC
Glucuronate isomerase.
 
   
 0.845
SBT42440.1
Predicted dehydrogenase.
 
     0.816
SBT42433.1
Oxidoreductase family, C-terminal alpha/beta domain.
 
     0.805
SBT42443.1
Pectate lyase.
       0.723
SBT51229.1
Gluconolactonase.
 
  
 0.666
SBT39733.1
4-hydroxymandelate oxidase.
 
  
 0.566
SBT42400.1
Protein of unknown function (DUF993).
 
  
 0.543
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.521
SBT40956.1
Regulator of RNase E activity RraA.
 
 
 0.479
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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