STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT44579.1ABC-2 type transport system ATP-binding protein. (241 aa)    
Predicted Functional Partners:
SBT44580.1
ABC-2 type transport system permease protein.
  
 0.984
SBT44583.1
Transcriptional regulator, TetR family.
 
     0.876
SBT44574.1
Predicted oxidoreductase.
       0.542
SBT44576.1
DNA-binding transcriptional regulator, MerR family.
       0.542
SBT39818.1
ABC-2 family transporter protein.
  
  0.539
SBT52897.1
Oleandomycin transport system permease protein.
 
 
 0.487
SBT45797.1
Lipooligosaccharide transport system permease protein.
  
 
  0.479
SBT47381.1
ABC-2 type transport system permease protein.
   
  0.469
SBT48604.1
ABC-2 type transport system permease protein.
   
  0.469
SBT48671.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
   
  0.469
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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