STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT45643.1Helix-turn-helix domain-containing protein. (301 aa)    
Predicted Functional Partners:
SBT45646.1
Protein of unknown function (DUF397).
 
     0.942
SBT45284.1
TIGR03083 family protein.
 
 
 
 0.902
SBT48348.1
TIGR03083 family protein.
   
 
 0.889
SBT39387.1
S-adenosyl methyltransferase.
  
     0.771
SBT39382.1
Protein of unknown function (DUF397).
  
     0.770
SBT43055.1
S-adenosyl methyltransferase.
  
     0.769
SBT46055.1
Protein of unknown function (DUF397).
  
     0.769
SBT44953.1
S-adenosyl methyltransferase.
  
     0.768
SBT50500.1
S-adenosyl methyltransferase.
  
     0.768
SBT53286.1
S-adenosyl methyltransferase.
  
     0.767
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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