STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT47931.1Major Facilitator Superfamily protein. (419 aa)    
Predicted Functional Partners:
SBT52742.1
Hypothetical protein.
  
     0.734
SBT49597.1
Hypothetical protein.
  
     0.575
SBT52227.1
Hypothetical protein.
  
    0.552
SBT43988.1
Transcriptional regulator, TetR family.
  
     0.532
SBT37001.1
ACT domain.
  
     0.524
htpX
Heat shock protein. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
       0.504
SBT45619.1
L,D-transpeptidase catalytic domain.
  
     0.489
SBT45254.1
Hypothetical protein.
  
     0.474
SBT40502.1
Hypothetical membrane protein.
  
     0.464
SBT51562.1
Hypothetical protein.
  
     0.462
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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