STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT49901.1Hypothetical protein. (310 aa)    
Predicted Functional Partners:
SBT49904.1
RNA polymerase sigma factor, sigma-70 family.
       0.773
SBT40187.1
Ankyrin repeats (3 copies).
  
    0.688
SBT40196.1
Ankyrin repeat-containing protein.
  
    0.668
SBT40181.1
Predicted metal-dependent peptidase.
  
     0.639
SBT46859.1
Cellulase/cellobiase CelA1.
  
     0.632
SBT40184.1
MoxR-like ATPase.
  
     0.590
SBT52786.1
Hypothetical protein; Manually curated.
  
    0.583
SBT50520.1
Helix-turn-helix domain-containing protein.
  
     0.582
SBT41722.1
Hypothetical protein.
  
    0.568
SBT46423.1
Hypothetical protein.
  
     0.541
Your Current Organism:
Micromonospora auratinigra
NCBI taxonomy Id: 261654
Other names: DSM 44815, JCM 12357, M. auratinigra, Micromonospora aurantionigra, Micromonospora auratinigra corrig. Thawai et al. 2004, Micromonospora sp. TT1-11, NBRC 101913, PCU 239, PCU:239, strain TT1-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.