Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SBT38609.1 | hflX | GA0070611_0610 | GA0070611_6166 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.430 |
| SBT38609.1 | radA | GA0070611_0610 | GA0070611_4211 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.768 |
| SBT38609.1 | recA | GA0070611_0610 | GA0070611_6148 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.927 |
| SBT38609.1 | recO | GA0070611_0610 | GA0070611_3203 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.683 |
| SBT38609.1 | recX | GA0070611_0610 | GA0070611_6149 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.699 |
| SBT38609.1 | ruvA | GA0070611_0610 | GA0070611_0472 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.764 |
| SBT38609.1 | ruvC | GA0070611_0610 | GA0070611_0471 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.549 |
| SBT41864.1 | miaB | GA0070611_1772 | GA0070611_6159 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.675 |
| SBT41864.1 | recA | GA0070611_1772 | GA0070611_6148 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.834 |
| SBT41864.1 | recO | GA0070611_1772 | GA0070611_3203 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.422 |
| SBT41864.1 | recX | GA0070611_1772 | GA0070611_6149 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.628 |
| dapF | hflX | GA0070611_6164 | GA0070611_6166 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.787 |
| dapF | miaB | GA0070611_6164 | GA0070611_6159 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.700 |
| dapF | recX | GA0070611_6164 | GA0070611_6149 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.755 |
| hflX | SBT38609.1 | GA0070611_6166 | GA0070611_0610 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.430 |
| hflX | dapF | GA0070611_6166 | GA0070611_6164 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.787 |
| hflX | miaB | GA0070611_6166 | GA0070611_6159 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.597 |
| hflX | recA | GA0070611_6166 | GA0070611_6148 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.400 |
| hflX | recX | GA0070611_6166 | GA0070611_6149 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.706 |
| miaB | SBT41864.1 | GA0070611_6159 | GA0070611_1772 | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.675 |
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