STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG97831.1Starch-binding associating with outer membrane. (469 aa)    
Predicted Functional Partners:
SDG97790.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   0.969
SDG97876.1
Hypothetical protein.
 
     0.756
SDG97919.1
Hypothetical protein.
 
     0.739
SDI40486.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.705
SDG99119.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.684
SDG97749.1
Regulatory protein, luxR family.
 
     0.667
SDI57366.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.636
SDG97963.1
Alpha/beta hydrolase family protein.
 
     0.565
SDG98007.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
 
  0.560
SDG64384.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   0.544
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.